Notes & Thoughts
  • Notes
  • Thoughts

  • Karan Dhingra

How does tree metrics works

Comparing MLTED, RF distance, and TreeVec MLTED Tree 1 Tree 2 Tree 3 Tree 4 Tree 5 Tree 6 On comparision of tree 1 with tree3 and 4, the output from MLTED was 100% similarity...

17 Aug 2020

Basics of Phylogeny

Phylogeny Given a VAFs, the task is to generate ancestoral tree such that it adheres to the principles of perfect phylogeny. Terminology M matrix of size $(m, n)$ denotes the presence of $m^{th}$ mutation in...

13 Aug 2020